Parameters Index¶
This document lists all ProDiMo parameters (Parameter.in), and the doc file where they are mentioned.
For 438 out of 655 parameters (66.87%) some documentation was found.
A¶
- ABS_CRI: Default:
1CR_Absorption - AVmax_PDR: maximum A_V Default:
100.0 - AVmin_PDR: minimum A_V Default:
0.0001 - Andersson2008_yield: Default:
False - ArmitageMRI: Default:
False - Av_CO_mc: Default:
3.0molecular_clouds_models - Av_C_mc: Default:
1.0molecular_clouds_models - Av_H2_mc: Default:
0.5molecular_clouds_models - Av_mc: Default:
10.0How_to_run_a_time_dependent_chemistry_model / grain_surface_chemistry / molecular_clouds_models
B¶
- BareComp: Default:
""Position_dependent_opacities - BarePos: Default:
""Position_dependent_opacities - Bell_quantum_rates: Default:
False - Bfield: Default:
0.0 - Bpow: Default:
1.0
C¶
- C13_C12: Default:
0.014Location-dependent-13CO-12CO_ratio - C1toN (multi zone): multiple_zones
- C1toO (multi zone): multiple_zones
- C1toS (multi zone): multiple_zones
- C2H2_LTE_cooling: Default:
FalseSlab-models / mid_IR_lines - C2H2_nonLTE: Default:
False - C2H4_LTE_cooling: Default:
FalseSlab-models / mid_IR_lines - C2H6_LTE_cooling: Default:
FalseSlab-models / mid_IR_lines - C2toN (multi zone): multiple_zones
- C2toO (multi zone): multiple_zones
- C2toS (multi zone): multiple_zones
- C3H4_LTE_cooling: Default:
FalseSlab-models / mid_IR_lines - C3toN (multi zone): multiple_zones
- C3toO (multi zone): multiple_zones
- C3toS (multi zone): multiple_zones
- C4H2_LTE_cooling: Default:
FalseSlab-models / mid_IR_lines - C4toN (multi zone): multiple_zones
- C4toO (multi zone): multiple_zones
- C4toS (multi zone): multiple_zones
- C6H6_LTE_cooling: Default:
FalseSlab-models / mid_IR_lines - CG97: Default:
False - CH3CNrovib_LTE_cooling: Default:
FalseSlab-models / mid_IR_lines - CH3OHrovib_LTE_cooling: Default:
FalseSlab-models / mid_IR_lines - CH3_LTE_cooling: Default:
FalseSlab-models / mid_IR_lines - CH3plus_nonLTE: Default:
False - CH4_LTE_cooling: Default:
FalseSlab-models / mid_IR_lines - CHEMEQ: Default:
False - CHEMSODE: Default:
False - CHI1_mc: Default:
CHI_ISMgrain_surface_chemistry / molecular_clouds_models - CHI2_mc: Default:
CHI_ISMgrain_surface_chemistry / molecular_clouds_models - CHI_ISM: strength of incident vertical UV; UV-field strength (Draine units) Default:
1.0UV_IR_ISRF / beginnersguide - CO2_LTE_cooling: Default:
FalseSlab-models / mid_IR_lines - CO2_nonLTE: Default:
False - CO2_rovib_Lambda: Default:
False - COA_Nvib: Default:
0Voigt_profile_escape_probability / large_number_of_CO_levels - COX_Nrot: Default:
60Voigt_profile_escape_probability / large_number_of_CO_levels - COX_Nvib: Default:
4Voigt_profile_escape_probability / large_number_of_CO_levels - CO_Emax: Default:
89460.0 - CO_H_2015: Default:
Falselarge_number_of_CO_levels - CO_diffusion_Lauck: Default:
False - CO_selfshielding_from_RT: Default:
FalseCO_selfshielding_from_RT - CO_sticking: Default:
False - COphotodesorption_yield2010: Default:
Falsephotodesorption - COrovib_sensitivity_analysis: Default:
Falselarge_number_of_CO_levels - CRCS: cosmic rate absorption Default:
0.0Unit:cm^2CR_Absorption - CRI: cosmic ray ionisation of H2 Default:
1.36e-17Unit:1/sCR_Absorption / How_to_run_a_time_dependent_chemistry_model / beginnersguide - CRI_mc: Default:
1.36e-17How_to_run_a_time_dependent_chemistry_model - CRP_a: Default:
-1.0CR_Absorption - CRP_high: Default:
-1.0CR_Absorption - CRP_lim: Default:
-1.0 - CRP_low: Default:
-1.0CR_Absorption - CRP_s0: Default:
-1.0CR_Absorption - CR_elec_heating: Default:
False - CR_induced_UV: use new CR UV field implementation Default:
False - CSrovib_LTE_cooling: Default:
FalseSlab-models / mid_IR_lines - C_H2_shielding_Bertoldi: Default:
True - C_shielding: Default:
TrueUV_line_shielding - Carbon_ionization_pumping: Default:
False - Chaabouni_stick: Default:
Falsegrain_surface_chemistry - ChemHeatFac: efficiency of chemical heating Default:
0.33333 - CoreMantle: ice in mantle or well-mixed? Default:
FalsePosition_dependent_opacities - CtoN (multi zone): multiple_zones
- CtoO (multi zone): multiple_zones
- CtoS (multi zone): multiple_zones
D¶
- DECO: Default:
False - DVODE: Default:
FalseHow_to_run_a_time_dependent_chemistry_model / grain_surface_chemistry / molecular_clouds_models - DVODEF90: Default:
FalseHow_to_run_a_time_dependent_chemistry_model - DVODPK: Default:
False - DiffusionApprox: Default:
True - Draine_sticking: Default:
False
E¶
- ER_tunnelling: Eley-Rideal tunnelling Default:
False - Eact_H2_Oueslati: Default:
False - Eads_H_Cazaux: Default:
False - Eads_Minissale: Default:
FalseMinissale's-Thermal-Desorption-Parameter-Values - Eads_filename: Default:
"AdsorptionEnergies.in"Eads - Eads_from_file: UMIST2012 adsorption energies Default:
FalseEads / Minissale's-Thermal-Desorption-Parameter-Values - Eley_Rideal: no Eley-Rideal reactions Default:
True
F¶
- FLiTs: want to run FLiTs afterwards? Default:
FalseFLiTs / Line-spectra-postprocessing / mid-IR-JWST-spectrum - FLiTsOBS_file: Default:
"" - FLiTs_contsub: Default:
True - FXray_PDR: incident Xray flux 2.7/1e-20 Default:
1e-20Unit:erg/s/cm2 - Faure_H2_op: Default:
False - Federman_H2_shielding: Default:
FalseH2selfshielding
G¶
- GEAR: Default:
Falsemolecular_clouds_models
H¶
- H2COrovib_LTE_cooling: Default:
FalseSlab-models / mid_IR_lines - H2O_Meisner_rates: Default:
False - H2O_addHITRANlines: Default:
False - H2O_coll_rate_sensitivity_analysis: Default:
FalseH2O_rovibrational_cooling - H2O_pumping: Default:
0.0 - H2O_rovib_Lambda: big ro-vib H2O models? Default:
TrueH2O_rovibrational_cooling / Slab-models - H2Srovib_LTE_cooling: Default:
FalseSlab-models / mid_IR_lines - H2_Cazaux2010: Default:
TrueH2_formation - H2_Cazaux2017: Default:
True - H2_Jura: Default:
FalseH2_formation - H2_no_surf_Cazaux: Default:
False - H2_shielding: Default:
TrueUV_line_shielding - H2_surf_chem_only: not only making H2 Default:
False - HCN_nonLTE: Default:
False - HCN_rovib_Lambda: Default:
False - HCNrovib_LTE_cooling: Default:
FalseSlab-models / mid_IR_lines - HD_shielding: Default:
True - H_diffusion_Cazaux_ice: Default:
False - H_sticking: not using Hollenbach & Salpeter H sticking Default:
True - Hall_Lesur: Default:
False - Hall_MRI: Default:
False - Hatom_bb: Default:
FalseParallel_ProDiMo / Include-H-as-coolant / accelerate_ProDiMo - Hatom_bf: Default:
FalseParallel_ProDiMo / Include-H-as-coolant / accelerate_ProDiMo - Heat_per_PhotoDiss: heating by photodissociation Default:
2.0 - HighTempRateExtrapol: Default:
False - Hunderi: Default:
FalsePorous_and_hollow_grains - Hunderi_CDE: Default:
FalsePorous_and_hollow_grains
I¶
- IR_ISRF: Default:
FalseUV_IR_ISRF - IcePowPos: Default:
""
J¶
- Jback_from_RT: calculate background Jnu from rad. transfer? Default:
TrueParallel_ProDiMo / How_to_set_parameters / ProDiMo_on_MCFOST
K¶
- KIDADB: Default:
""ChemicalDatabases / Chemical_rates - KIDA_rates: Default:
FalseChemicalDatabases / Chemical_rates
L¶
- L1: Default:
1./3. - L2: Default:
1./3. - LLL: Default:
FalsePorous_and_hollow_grains - LSODE: Default:
Falsemolecular_clouds_models - LSODES: Default:
False - LTEpopulation: Default:
False - Lacc: Default:
0.0star - Lalpha: Default:
0.0 - Leiden_photoparameters: Default:
False - Lique2015_H2_H_rates: Default:
False - Lstar: stellar luminosity Default:
1.0Unit:LsunHow_to_set_parameters / ProDiMo_on_MCFOST / Slab-models / beginnersguide / star - Lyalpha_perfect_escape: Default:
True
M¶
- M2disk (multi zone): multiple_zones
- M2dot (multi zone): multiple_zones
- M2dust (multi zone): multiple_zones
- M3disk (multi zone): multiple_zones
- M3dot (multi zone): multiple_zones
- M3dust (multi zone): multiple_zones
- M4disk (multi zone): multiple_zones
- M4dot (multi zone): multiple_zones
- M4dust (multi zone): multiple_zones
- MCFOST_B2 (multi zone): multiple_zones
- MCFOST_B3 (multi zone): multiple_zones
- MCFOST_B4 (multi zone): multiple_zones
- MCFOST_BETA (multi zone): beginnersguide / dust_settling / fixed_density_structure / multiple_zones
- MCFOST_H0 (multi zone): beginnersguide / fitting / fixed_density_structure / multiple_zones
- MCFOST_H2 (multi zone): multiple_zones
- MCFOST_H3 (multi zone): multiple_zones
- MCFOST_H4 (multi zone): multiple_zones
- MCFOST_LIKE: parametric disk structure like in MCFOST?; use Tdust and mu=2.3amu for cT? Default:
Falsebeginnersguide / fixed_density_structure / multiple_zones / vertical_structure - MCFOST_R2 (multi zone): multiple_zones
- MCFOST_R3 (multi zone): multiple_zones
- MCFOST_R4 (multi zone): multiple_zones
- MCFOST_RREF (multi zone): beginnersguide / fixed_density_structure / multiple_zones
- MCMAX_LIKE: p = n k Tgas for hydro-structure Default:
Falsemultiple_zones / vertical_structure / viscous_heating - MEBDF: Default:
False - MRI: Default:
False - Maxwell_Garnett: Default:
FalsePorous_and_hollow_grains - Mdisk (multi zone): How_to_run_a_full_model / How_to_run_a_fully_converged_hydrostatic_model / How_to_set_parameters / Slab-models / beginnersguide / fitting / fixed_density_structure / multiple_zones / viscous_heating
- Mdot (multi zone): RTparameter / multiple_zones / viscous_heating
- Mdust (multi zone): ProDiMo_on_MCFOST / multiple_zones
- Mie_ascii: Default:
False - Minissale_evap: Default:
Falsemolecular_clouds_models - Mstar: stellar mass Default:
1.0Unit:MsunHow_to_set_parameters / ProDiMo_on_MCFOST / Slab-models / beginnersguide / star / star_fit - Mumma_water_op: Default:
False
N¶
- N1UV: Default:
1UV_photorates - N2_shielding: use N2 self-shielding Default:
TrueN2_shielding - NBaregrains: Default:
0Position_dependent_opacities - NDUST: number of selected dust species Default:
1Porous_and_hollow_grains / Position_dependent_opacities / molecular_clouds_models / multiple_zones - NH3rovib_LTE_cooling: Default:
FalseSlab-models / mid_IR_lines - NH_Rout: Default:
1e+20 - NHfilter: Default:
0.0 - NIPL: Default:
0Position_dependent_opacities - NLAM: Default:
20Parallel_ProDiMo / RTbenchmark / ProDiMo_SED / ProDiMo_on_MCFOST / RTparameter / UV_photorates / compute_visibilities - NMANTLE: number of ice species in dust Default:
0Position_dependent_opacities - NOrovib_LTE_cooling: Default:
FalseSlab-models / mid_IR_lines - NSIZE: number of dust size bins Default:
0Porous_and_hollow_grains - NTestColl: Default:
0IR-pumping - NUV: Default:
3ProDiMo_on_MCFOST / UV_photorates - NXX: Default:
30Parallel_ProDiMo / RTbenchmark / How_to_run_a_full_model / How_to_run_a_fully_converged_hydrostatic_model / How_to_set_parameters / ProDiMo_on_MCFOST / RTparameter / multiple_zones / spatial_grid_resolution - NXratio: Default:
1.0multiple_zones / spatial_grid_resolution - NXray: Default:
20XrayRadiativeTransfer - NZONES: Default:
1Look_at_the_results / ProDiMo_on_MCFOST / multiple_zones / spatial_grid_resolution - NZZ: Default:
30Parallel_ProDiMo / RTbenchmark / How_to_run_a_full_model / How_to_run_a_fully_converged_hydrostatic_model / How_to_set_parameters / ProDiMo_on_MCFOST / RTparameter / multiple_zones / spatial_grid_resolution - N_age: for more detailed models more steps might be required; no of successive output ages Default:
1Debugging_with_slot_keep / How_to_run_a_time_dependent_chemistry_model / grain_surface_chemistry / molecular_clouds_models - N_age_mc: Default:
1Debugging_with_slot_keep / How_to_run_a_time_dependent_chemistry_model / grain_surface_chemistry / molecular_clouds_models - NewChemScan: new initial abund. from down-right scan? Default:
TrueParallel_ProDiMo / How_to_set_parameters / accelerate_ProDiMo - Ninner: Default:
10AutomaticTests / RTparameter / rounded_inner_walls / spatial_grid_resolution - NlamSED: number of lambda gridpoints Default:
40ProDiMo_SED / ProDiMo_on_MCFOST / compute_visibilities - Nlay: Default:
2.0 - NlayS6: Default:
200.0 - NnewWall: Default:
5How-to-rerun-an-old-model / rounded_inner_walls / spatial_grid_resolution - Nouter: Default:
3 - Nphi: Default:
9RTbenchmark / RTparameter - Npixel_continuum: Default:
0Images - Ntheta: Default:
17RTbenchmark / ProDiMo_Line_Transfer / RTparameter
O¶
- O17_O16: Default:
1./1900.0 - O18_O16: Default:
1./498.7 - O2rovib_LTE_cooling: Default:
FalseSlab-models / mid_IR_lines - OH_ExoMol: non-LTE OH model Default:
TrueOH-cooling / mid_IR_lines - OH_nonLTE: Default:
False - OH_pumping: Default:
0.0 - OHrovib_LTE_cooling: Default:
FalseOH-cooling / Slab-models / mid_IR_lines - OSU_Alchemic: use the network of the benchmark Default:
FalseChemicalDatabases / Chemical_rates - OSU_rates: using the OSU rates? Default:
FalseChemicalDatabases / Chemical_rates - O_diffusion_Congiu: Default:
False
P¶
- PAH_NC: number of C atoms in PAH Default:
""PAH_size - PAH_NH: number of H atoms in PAH Default:
""PAH_size - PAH_charged: Default:
-1.0 - PAH_from_RT: PAH heating from cross-sections? Default:
FalseParallel_ProDiMo / How_to_set_parameters / PAH_heating_and_chemistry / ProDiMo_on_MCFOST - PAH_in_RT: are PAH opacities included in rad.trans.? Default:
False - PAH_name: Default:
""PAH_size - PAobj: Default:
0.0 - PStar: Default:
0.0 - PlanckSpec: Default:
False - ProDiMo2mcfost_version: Default:
3
Q¶
- QIndexTotVol: volume of ice available can vary from place to place Default:
0Position_dependent_opacities - QPosDep: position dependent Q efficiency calculation Default:
FalsePosition_dependent_opacities - QSSA: Default:
False - QvisSplit: Default:
-1.0
R¶
- R2in (multi zone): multiple_zones
- R2out (multi zone): ProDiMo_on_MCFOST / multiple_zones
- R3in (multi zone): multiple_zones
- R3out (multi zone): multiple_zones
- R4in (multi zone): multiple_zones
- R4out (multi zone): multiple_zones
- RADAU: Default:
False - RDI: Default:
0.0Radioactive_decay - RKCK: Default:
False - ROSEN: Default:
Falsemolecular_clouds_models - RTitmax: Default:
50RTbenchmark / RTparameter - Rdrift: Default:
0.0Unit:AU - Rin (multi zone): H2O_rovibrational_cooling / How_to_set_parameters / Images / ProDiMo_on_MCFOST / Slab-models / beginnersguide / fixed_density_structure / input_and_output_files / multiple_zones
- Rout (multi zone): H2O_rovibrational_cooling / How_to_set_parameters / Images / ProDiMo_on_MCFOST / Slab-models / beginnersguide / channel_maps / envelope / fixed_density_structure / input_and_output_files / multiple_zones
- Rph_generic_shape: Default:
2 - Rphoto_bandint: use band-integrated photo-rates? Default:
FalseParallel_ProDiMo / How_to_set_parameters / ProDiMo_on_MCFOST / UV_photorates / XrayRadiativeTransfer - Rphoto_from_RT: calculate photorates from rad. transfer? Default:
FalseParallel_ProDiMo / How_to_set_parameters / ProDiMo_on_MCFOST / UV_photorates - Rtaper: tapering-off radius Default:
1e+99Unit:AUbeginnersguide / envelope / fixed_density_structure / multiple_zones
S¶
- SDIRK: Default:
False - SEULEX: Default:
False - SO2rovib_LTE_cooling: Default:
FalseSlab-models / mid_IR_lines - STAND: Default:
FalseChemical_rates / STAND2020 - STANDfilter: Default:
" B BS BI G Q R T I A AS AI F D L U RA "STAND2020 - STANDover: Default:
TrueSTAND2020 - STCRI: Default:
-1.0 - STCRP_NHE: Default:
2.5e+25 - STCRP_a: Default:
-1.0CR_Absorption - STCRP_b: Default:
-1.0CR_Absorption - STCRP_high: Default:
-1.0CR_Absorption - STCRP_low: Default:
-1.0CR_Absorption - STCRP_method: Default:
-1CR_Absorption - STIFBS: Default:
Falsegrain_surface_chemistry / molecular_clouds_models - SVD_improve: Default:
False
T¶
- Tback: Default:
2.7CMB-Temperature / UV_IR_ISRF - Td_from_RT: calculate dust temp. from rad. transfer? Default:
FalseHow_to_set_parameters / ProDiMo_on_MCFOST - Td_mc: Default:
10.0How_to_run_a_time_dependent_chemistry_model / grain_surface_chemistry / molecular_clouds_models - Tdust_PDR: dust temperature Default:
20.0Unit:K - Teff: stellar effective temperature Default:
4000.0Unit:KHow_to_set_parameters / ProDiMo_on_MCFOST / Slab-models / StellarSpectra / beginnersguide / star - Tex_subthermal: Default:
0.0Slab-models - Textrapolate: extrapolate T in gas-phase reactions? Default:
TrueChemical_rates - Tg_mc: Default:
10.0How_to_run_a_time_dependent_chemistry_model / grain_surface_chemistry / molecular_clouds_models - Tgas_PDR: gas temperature Default:
50.0Unit:K - Tgas_from_file: Default:
False - Tgas_once: Default:
FalseHow_to_run_a_time_dependent_chemistry_model
U¶
- UMIST2006: UMIST version Default:
FalseChemical_rates - UMIST2012: use UMIST2012 chemical database Default:
TrueChemicalDatabases / Chemical_rates - UMIST2022: Default:
FalseChemical_rates - UMISTDB: Default:
""ChemicalDatabases / Chemical_rates - UV_H2: electronic levels for H2? Default:
FalseH2_UV_fluorescence / Voigt_profile_escape_probability - UVgasRT: Default:
False - UVphoto_highres: Default:
Falsemolecular_shielding_factors - UVpumping: use large model atoms? Default:
FalseParallel_ProDiMo / ProDiMo_on_MCFOST / Voigt_profile_escape_probability / optical-and-UV-levels
V¶
- VHEAT_GAS: put heat into the dust Default:
TrueRTparameter - Voigt_escape: Default:
FalseVoigt_profile_escape_probability / large_number_of_CO_levels / optical-and-UV-levels
W¶
- Wolcott_Green_shielding: Default:
FalseH2selfshielding
X¶
- XrayRT: do Xray radiative transfer? Default:
FalseParallel_ProDiMo / XrayRadiativeTransfer - XrayRT_chem: couple Xray_RT to chemistry Default:
TrueParallel_ProDiMo / XrayRadiativeTransfer - XrayRT_chem_effion: Default:
False - XrayRT_dust: Default:
FalseXrayRadiativeTransfer - XrayRT_dust_opac: Default:
FalseXrayRadiativeTransfer - XrayRT_opac: Default:
4XrayRadiativeTransfer - Xray_Bg_Flux: Default:
0.0XrayRadiativeTransfer - Xray_Bg_Temp: Default:
40000000.0XrayRadiativeTransfer - Xray_Bg_XRB: Default:
False - Xray_Emax: optional: maximum photon energy to be considered as Xray [keV] Default:
61.99215628Unit:keVHow_to_run_a_X-ray_model / star - Xray_Emin: X-ray min. photon energy; minimum energy considered as Xray Default:
0.1Unit:keVHow_to_run_a_X-ray_model / Include-H-as-coolant / star - Xray_FUVumist: Default:
FalseHow_to_run_a_X-ray_model - Xray_Lum: X-ray luminosity Default:
1e+30Unit:erg/sHow_to_run_a_X-ray_model / beginnersguide / molecular_clouds_models / star - Xray_Temp: X-ray emission temperature; shape of X-ray spectrum Default:
10000000.0Unit:KHow_to_run_a_X-ray_model / beginnersguide / star - Xray_mc: Default:
FalseDebugging_with_slot_keep - Xray_norm: Default:
FalseHow_to_run_a_X-ray_model / star - Xray_wlp: optional: number of wl points used for the X-Ray spectrum Default:
1000How_to_run_a_X-ray_model - Xray_workaround: Default:
FalseHow_to_run_a_time_dependent_chemistry_model - Xrays: use Xray chemistry and heating?; want Xrays? Default:
FalseParallel_ProDiMo / How_to_run_a_X-ray_model / Slab-models / beginnersguide
Z¶
- Zmax_v2: Default:
10000.0dust_charge_chemistry
A¶
- a1_mc: Default:
0.1Unit:micHow_to_run_a_time_dependent_chemistry_model / grain_surface_chemistry / molecular_clouds_models - a1max (multi zone): multiple_zones
- a1min (multi zone): multiple_zones
- a2_settle (multi zone): multiple_zones
- a2max (multi zone): multiple_zones
- a2min (multi zone): multiple_zones
- a3_settle (multi zone): multiple_zones
- a3max (multi zone): multiple_zones
- a3min (multi zone): multiple_zones
- a4_settle (multi zone): multiple_zones
- a4max (multi zone): multiple_zones
- a4min (multi zone): multiple_zones
- a_nosettle: Default:
-1.0Unit:mic - a_settle (multi zone): dust_settling / mid-IR-JWST-spectrum / multiple_zones
- adjustRTconv: Default:
0.5 - adjustRout: Default:
Truefixed_density_structure - adrift: Default:
0.0Unit:mic - albedoUV_mc: Default:
0.6 - alpha_from_Mdot: Default:
False - alpha_law: Default:
1 - alpha_mix: Default:
0.0mixing - alpha_vis: viscous heating parameter Default:
0.0viscous_heating - amax (multi zone): RTbenchmark / How_to_set_parameters / Porous_and_hollow_grains / ProDiMo_on_MCFOST / Slab-models / molecular_clouds_models / multiple_zones
- amin (multi zone): RTbenchmark / How_to_set_parameters / Porous_and_hollow_grains / ProDiMo_on_MCFOST / Slab-models / molecular_clouds_models / multiple_zones
- analyse_failed_chemistry: Default:
False - apow: dust size distr power index f(a)~a^-apow Default:
3.5RTbenchmark / How_to_set_parameters / Porous_and_hollow_grains / ProDiMo_on_MCFOST / Slab-models / molecular_clouds_models / multiple_zones - atol_chem: abs. tolerance for advance_chemistry Default:
1e-99 - auto_charge_exchange: Default:
TrueAutomatic-generation-of-charge-exchange-and-proton-exchange-reactions - auto_create_barrier: Default:
5000.0Automatic-generation-of-charge-exchange-and-proton-exchange-reactions - auto_grain_endotherm: Default:
FalseAutomatic-generation-of-charge-exchange-and-proton-exchange-reactions - auto_proton_exchange: Default:
FalseAutomatic-generation-of-charge-exchange-and-proton-exchange-reactions
B¶
- barrier_width: 1A in cm Default:
1e-08 - basel_filename: Default:
"" - beta_mag: Default:
0.0 - beta_max: maximum half opening angle of resolved disk; defines the cavity opening angle (here 20 degree) Default:
45.0Unit:degProDiMo_on_MCFOST / envelope / multiple_zones - bh_mie: Default:
FalsePorous_and_hollow_grains - branchingFraction: Default:
False - bulk_reactions: Default:
False
C¶
- c_mie: Default:
FalsePorous_and_hollow_grains - calcSED: calculate SED and images? Default:
TrueImages / ProDiMo_SED / ProDiMo_on_MCFOST / beginnersguide / compute_visibilities / mixing - charge_chemistry_v3: Default:
Falsedust_charge_chemistry / dust_photoelectric_from_RT - check_Mie: Default:
FalsePorous_and_hollow_grains - check_network: the osu network fails the checks Default:
FalseAutomatic-generation-of-charge-exchange-and-proton-exchange-reactions / dust_charge_chemistry - chem_precis: precision in solve_chemistry Default:
1e-08accelerate_ProDiMo - chem_scale: scale chemical equations to solve? Default:
True - chem_stability: Default:
Trueaccelerate_ProDiMo - chemanalysis: output; output for rate network analysis Default:
FalseDebugging_with_slot_keep / chemistry_details / grain_surface_chemistry - chemanalysis_fits: Default:
Falsechemistry_details - chi_from_RT: calculate chi from UV rad. transfer? Default:
FalseParallel_ProDiMo / How_to_set_parameters / ProDiMo_on_MCFOST - chi_logbin: using spectral windows to calc CHI_PHOTO? Default:
FalseProDiMo_SED - colour_correct_from_RT: Default:
TruePAH_heating_and_chemistry - comp_forces: Default:
False - compare_photorates: Default:
False - compute_line_visibilities: Default:
False - compute_visibilities: Default:
Falsecompute_visibilities - computed_CR_DESORB_rates: Default:
FalseCR_desorption_rate - conserve_pressure: conserve pgas instead of n
? Default: FalseHow_to_set_parameters / ProDiMo_on_MCFOST / fixed_density_structure / vertical_structure - cont_Ndisk: Default:
150Images - cont_Nhole: Default:
40Images - cont_Npuff: Default:
30Images - cont_Nstar: Default:
4Images - cont_Ntheta: Default:
72Images - cont_Rout: Default:
0.0Unit:AUImages - cont_lmax: Default:
9e+99 - cont_lmin: Default:
0.0 - continuum_cube_fits: Default:
FalseImages - core_Nlay: in the silicate core Default:
1.0 - correct_PAH: Default:
0.4 - correct_endotherm: Default:
False - cputime_max: max. CPU time for advance_chemistry Default:
20.0Unit:sParallel_ProDiMo / accelerate_ProDiMo - custom_13COrovib: Default:
Falselarge_number_of_CO_levels - custom_C17Orovib: Default:
False - custom_C18Orovib: Default:
Falselarge_number_of_CO_levels - custom_COrovib: big ro-vibronic CO model? Default:
TrueVoigt_profile_escape_probability / large_number_of_CO_levels - custom_hitran_cooling: Default:
Falsemid_IR_lines
D¶
- d2ust_settle (multi zone): multiple_zones
- d2ust_to_gas (multi zone): ProDiMo_on_MCFOST / multiple_zones
- d3ust_settle (multi zone): multiple_zones
- d3ust_to_gas (multi zone): multiple_zones
- d4ust_settle (multi zone): multiple_zones
- d4ust_to_gas (multi zone): multiple_zones
- daduc: Default:
0.0 - debug_photorates: Default:
False - deduc: Default:
0.0 - deltaMRI: Default:
0.5 - diffusion_limited: reaction barriers are account for Default:
False - diffusion_tunnelling: Default:
True - diffusion_width: Default:
1e-08 - disk_structure_damp: Default:
0.3vertical_structure - disk_structure_error_threshold: Default:
2.0vertical_structure - dist: distance Default:
100.0Unit:pcProDiMo_Line_Transfer / ProDiMo_SED / ProDiMo_on_MCFOST / compute_visibilities / star_fit - dust_bins: Default:
1 - dust_charge_chemistry: Default:
Falsedust_charge_chemistry - dust_nonRE: dust not in radiative equilibrium Default:
FalseHow_to_set_parameters / RTparameter / viscous_heating - dust_opacity_list_file: Default:
"dust_opacity_list.txt"XrayRadiativeTransfer / molecular_clouds_models - dust_photoelectric_from_RT: Default:
Falsedust_photoelectric_from_RT - dust_settle (multi zone): dust_settling / multiple_zones
- dust_to_gas (multi zone): ProDiMo_on_MCFOST / Slab-models / grain_surface_chemistry / molecular_clouds_models / multiple_zones
- dust_to_gas_mc: Default:
0.01grain_surface_chemistry / molecular_clouds_models - duty_cycle: as in the benchmark Default:
0.0
E¶
- e2psilon (multi zone): multiple_zones
- e3psilon (multi zone): multiple_zones
- e4psilon (multi zone): multiple_zones
- el_is_sp: electrons as independent species? Default:
True - endothermic_barrier: no effect on the rates for endo reations Default:
True - enhanced_H2form_mc: Default:
1.0 - env_Mdot: mass infall rate M_sun/yr Default:
1e-06envelope - env_Rcavity: "virtual" inner radius of the envelope the inner radius of the domain is given by Rin Default:
1.0envelope - env_Rcent: centrifugal radius Default:
100.0envelope - env_amax: maximum grain size in the envelope Default:
-1.0Unit:micenvelope - env_cav_coef: Default:
0.9envelope - env_cav_pow: shape of the cavity Default:
1.0envelope - env_method: Default:
3 - env_structure: Default:
Falseenvelope - eps_dJnu: Default:
0.0 - eps_dTworst: Default:
0.0 - epsilon (multi zone): RTparameter / beginnersguide / fixed_density_structure / multiple_zones / viscous_heating
- equil_BURCAT: Default:
False - equil_chem: Default:
False - equil_cond: Default:
False - equil_elemadjust: Default:
False - escape_Radex_slab: Default:
FalseSlab-models - escape_Radex_sphere: Default:
FalseSlab-models - escape_maser: Default:
False - escape_sphere: Default:
FalseSlab-models - escpro_fit: Default:
False - escpro_lmax: Default:
40.0 - escpro_lmin: Default:
5.0 - estimate_13CO_12CO_ratio: Default:
FalseLocation-dependent-13CO-12CO_ratio - evap_fac: no chemidesorption Default:
0.01grain_surface_chemistry
F¶
- f2PAH (multi zone): ProDiMo_on_MCFOST / multiple_zones
- f3PAH (multi zone): multiple_zones
- f4PAH (multi zone): multiple_zones
- f70: Default:
3.16d-19 - fPAH (multi zone): PAH_heating_and_chemistry / PAH_size / ProDiMo_on_MCFOST / multiple_zones
- fPAH_mc: Default:
1.0 - fUV: LUV/Lstar; UV excess Default:
-1.0ProDiMo_on_MCFOST / beginnersguide / star - fake_AD_chemical_rates: Default:
False - fake_CE_chemical_rates: Default:
False - fake_DR_chemical_rates: Default:
False - fake_IN_chemical_rates: Default:
False - fake_NN_chemical_rates: Default:
False - fake_NN_prefactor: Default:
False - fake_RA_chemical_rates: Default:
False - fake_RR_chemical_rates: Default:
False - fast_semi_implicit: Default:
False - fbinding: Default:
0.5grain_surface_chemistry - first_order_tdesorption: Default:
False - fit_Tranges: Default:
True - fixed_surface_density: Default:
False1Dinterface - fixed_water_op: Default:
0.0 - freeze_RT: freeze radiative transfer results Td/Jv? Default:
FalseHow_to_run_a_full_model / How_to_run_a_fully_converged_hydrostatic_model / How_to_set_parameters / IR-pumping / ProDiMo_Line_Transfer / mixing - freeze_Tgas: freeze gas temperature? Default:
FalseHow_to_run_a_time_dependent_chemistry_model / How_to_set_parameters / IR-pumping / ProDiMo_Line_Transfer - freeze_chemistry: freeze chemical concentrations? Default:
FalseIR-pumping / ProDiMo_Line_Transfer - freeze_diskstruc: freeze density/pressure structure? Default:
FalseHow_to_set_parameters / IR-pumping / ProDiMo_Line_Transfer - from_hash: Default:
False
G¶
- gas_shielded_photodesorption: Default:
Truephotodesorption - gbar: Default:
Falselarge_number_of_CO_levels / optical-and-UV-levels - gdrift: Default:
0.0Unit:AU - grain_H2_op_conversion: Default:
False - gtaper: tapering-off exponent Default:
-99.0envelope - gzip: Default:
False
H¶
- half_same_species: Default:
False - handle_UMIST: handle UMIST-data (erase/overwrite/onlyadd) Default:
'onlyadd'Chemical_rates / Slab-models - high_res_photodata: Default:
False - hitran2020: Default:
TrueSlab-models / mid_IR_lines - hitran_min_strength: Default:
1e-05Line-spectra-postprocessing / Slab-models / mid_IR_lines - hollow_sphere: max hollow volume ratio Default:
0.0Porous_and_hollow_grains - hot_atom: Default:
0.0
I¶
- ice_photodesorption_from_RT: Default:
Falsephotodesorption - icepot: a = abare + constabare^icepot Default:*
0.0Position_dependent_opacities - ignore_Tg_midplane: Default:
Falseaccelerate_ProDiMo - image_fov_arcsec: Default:
0.0 - immediate_FLiTs: Default:
FalseFLiTs - immediate_lines: line RT directly after init? Default:
FalseProDiMo_Line_Transfer / large_number_of_CO_levels - incl: inclination (0=face-on) Default:
45.0Unit:degLook_at_the_results / ProDiMo_Line_Transfer / ProDiMo_SED / ProDiMo_on_MCFOST / RATRAN / compute_visibilities - interface1D: activate the 1D interface Default:
False1Dinterface - interface2D: Default:
Falseinterface2D - ion_H_coll: Default:
False - ion_drift: Default:
False
K¶
- keep_iterations: Default:
False
L¶
- lapack_solver: Default:
False - line_Ndisk: Default:
100channel_maps - line_Nhole: Default:
40channel_maps - line_Npuff: Default:
10channel_maps - line_Nstar: parameters for the line transfer grid Default:
5channel_maps - line_Ntheta: Default:
72channel_maps - line_Rout: Default:
0.0Unit:AUchannel_maps - line_cube: 3D-line cube output? Default:
Falsechannel_maps - line_cube_analysis: Default:
Falsechannel_maps - line_cube_fits: 3D-line cube output ? Default:
Falsechannel_maps - line_cube_whichside: Default:
0channel_maps - line_image_side_Npix: line image size fore cube output Default:
201channel_maps - line_nobackground: Default:
FalseProDiMo_Line_Transfer - line_nodust: Default:
FalseProDiMo_Line_Transfer - line_nostar: Default:
FalseProDiMo_Line_Transfer - line_novel: Default:
FalseProDiMo_Line_Transfer - line_overlap: Default:
False1D-Slab-Models / Slab-models - line_transfer: calculate line transfer? Default:
FalseProDiMo_Line_Transfer / ProDiMo_on_MCFOST / beginnersguide / channel_maps / input_and_output_files / mixing / spatial_grid_resolution - line_vkep: Default:
1ProDiMo_Line_Transfer - lmaxSED: minimum lambda[mic] Default:
5000.0ProDiMo_SED / ProDiMo_on_MCFOST / compute_visibilities - lminSED: minimum lambda[mic] Default:
0.1ProDiMo_SED / ProDiMo_on_MCFOST / compute_visibilities
M¶
- match_Cazaux2010: Default:
False - max_diff_photorates: Default:
10.0 - maxit: max number of global iterations Default:
9999999How_to_set_parameters / accelerate_ProDiMo / mixing - maxtime: maximum computational time [sec] Default:
1e+99How_to_set_parameters - mc_grid: Default:
Falsegrain_surface_chemistry / molecular_clouds_models - mc_only: Default:
FalseDebugging_with_slot_keep / grain_surface_chemistry / molecular_clouds_models - mc_steady_state: Default:
FalseDebugging_with_slot_keep / grain_surface_chemistry / molecular_clouds_models - mc_thermal_balance: Default:
FalseDebugging_with_slot_keep / grain_surface_chemistry / molecular_clouds_models - mean_dust_photoelectric_from_RT: Default:
Falsedust_photoelectric_from_RT - memLimitGB: Default:
8Control-memory-consumption - merge_reaction_files: Default:
Falsecombine_reaction_rate_lists - min_Ng_iter: Default:
99 - model_name: Default:
"" - molecular_cloud: initial concentrations from mol.cloud.? Default:
FalseDebugging_with_slot_keep / How_to_run_a_time_dependent_chemistry_model - monoSED: use monochromatic mode? Default:
TrueProDiMo_SED / ProDiMo_on_MCFOST / compute_visibilities
N¶
- nH_PDR: H nuclei density Default:
10Unit:cm^-3 - nH_mc: Default:
10000.0How_to_run_a_time_dependent_chemistry_model / grain_surface_chemistry / molecular_clouds_models - nH_surround: Default:
100.0 - newUVphoto: Default:
0UV_line_shielding / mid-IR-JWST-spectrum / molecular_shielding_factors - new_energetics: Default:
False - new_escape: Default:
TrueNew-escape-probabilities-for-ProDiMo - new_escape_lineflux: Default:
TrueNew-escape-probabilities-for-ProDiMo - new_shielding: Default:
TrueUV_line_shielding / molecular_shielding_factors - noEUV: Default:
TrueInclude-H-as-coolant / UV_photorates / star - no_C_shielding: Default:
False - no_background_pumping: Default:
False - nprod_file1: Default:
""combine_reaction_rate_lists - nprod_file2: Default:
""combine_reaction_rate_lists - num_noerase: exceptions from erasing UMIST data Default:
0Slab-models - numerical_jacobian: Default:
0accelerate_ProDiMo
O¶
- ode_element_conservation: Default:
True - old_surface_GG_reactions: Default:
False - old_wall_cooling: Default:
False - openmp_Nlev: Default:
1000 - optimise_phi: Default:
TrueRTparameter - optimise_theta: Default:
TrueRTparameter - other_PAH: Default:
FalsePAH_size - other_reactions: Default:
TrueChemicalDatabases / Chemical_rates
P¶
- pUV: UV powerlaw exponent Default:
0.2ProDiMo_on_MCFOST / beginnersguide / star - parallel_chem: Default:
FalseParallel_ProDiMo / accelerate_ProDiMo - parallel_debug: Default:
FalseParallel_ProDiMo / accelerate_ProDiMo - perfect_ice: use long integration time for ices? Default:
FalseHow_to_run_a_full_model / How_to_run_a_fully_converged_hydrostatic_model / How_to_set_parameters - photodesorption: Default:
Truegrain_surface_chemistry - photorates_version: Default:
2UV_photorates - population_restart: Default:
FalseFLiTs - precomputed_CO_selfshielding: Default:
FalseCO_selfshielding_from_RT - precomputed_H2_CO_selfshielding: Default:
FalseCO_selfshielding_from_RT - preconditioning: Default:
False - previous_mc_model_filename: Default:
""molecular_clouds_models - pseudo_Voigt: Default:
False - pseudo_aniso_scat: ignore forward scattering Default:
FalseRTbenchmark / Porous_and_hollow_grains
Q¶
- qsa: Default:
False - quadp_solver: use quadruple precision solver? Default:
Trueaccelerate_ProDiMo
R¶
- r1aduc (multi zone): multiple_zones / rounded_inner_walls
- r1educ (multi zone): multiple_zones / rounded_inner_walls
- r2aduc (multi zone): multiple_zones / rounded_inner_walls
- r2educ (multi zone): multiple_zones / rounded_inner_walls
- r3aduc (multi zone): multiple_zones / rounded_inner_walls
- r3educ (multi zone): multiple_zones / rounded_inner_walls
- r4aduc (multi zone): multiple_zones / rounded_inner_walls
- r4educ (multi zone): multiple_zones / rounded_inner_walls
- radtrans: continuum radiative transfer?; calculate dust continuum RT? Default:
FalseParallel_ProDiMo / How_to_set_parameters / ProDiMo_on_MCFOST / RATRAN / XrayRadiativeTransfer - raduc (multi zone): multiple_zones / rounded_inner_walls
- random_initial_population: Default:
FalseSlab-models - rayleighgans_limit: Default:
0.7 - reacfile1: Default:
""combine_reaction_rate_lists - reacfile2: Default:
""combine_reaction_rate_lists - reaction_file: Default:
""Chemical_rates - readMCFOST: Default:
FalseProDiMo_on_MCFOST - read_fits_binary: Default:
Falsefits_format - read_reactions_in_csv: Default:
TrueChemicalDatabases / Chemical_rates - reduc (multi zone): multiple_zones / rounded_inner_walls
- refine_Spitzer: Default:
FalseRTparameter - refine_zz: Default:
False - refinement_fac: Default:
-1.0RTparameter - reinit_RT: Default:
False - resolve_star: Default:
TrueRTparameter - restart: restart from checkpoint file?; run from restart? Default:
FalseParallel_ProDiMo / Debugging_with_slot_keep / How_to_run_a_full_model / How_to_run_a_fully_converged_hydrostatic_model / How_to_run_a_time_dependent_chemistry_model / How_to_set_parameters / IR-pumping / ProDiMo_Line_Transfer / ProDiMo_on_MCFOST / Run_ProDiMo / Slab-models / XrayRadiativeTransfer / channel_maps / mixing - rho_gr: dust grain material mass density Default:
3.5Unit:g/cm^3ProDiMo_on_MCFOST / grain_surface_chemistry / molecular_clouds_models - rho_gr_mc: Default:
3.0grain_surface_chemistry / molecular_clouds_models - rtol_chem: rel. tolerance for advance_chemistry Default:
2e-05
S¶
- self_shielding: Default:
TrueUV_line_shielding - settle_method: dust settling (Dubrulle et al. 1995); power-law dust settling Default:
1dust_settling / mid-IR-JWST-spectrum / multiple_zones - shielding_mc: do not account for self-shielding in mc Default:
True - sizeParam_Mie: Default:
5.5d5Porous_and_hollow_grains - sizefit_powerindex: Default:
2.0 - slab_escape: Default:
FalseSlab-models - slot_ix: Default:
1Debugging_with_slot_keep - slot_iz: Default:
NZZ-1Debugging_with_slot_keep - slot_keep: Default:
FalseDebugging_with_slot_keep - smoothEUV: Default:
False - soft_edges: add confining boundary layers? Default:
FalseHow_to_set_parameters - solve_diskstruc: solve the vertical hydrostatic eq.? Default:
TrueHow_to_set_parameters / ProDiMo_on_MCFOST / beginnersguide / fixed_density_structure / multiple_zones / vertical_structure - solve_temp: solve the heating/cooling balance? Default:
TrueParallel_ProDiMo / How_to_set_parameters / IR-pumping / ProDiMo_on_MCFOST / Slab-models - sparse_Nlev: Default:
121H2O_rovibrational_cooling / H2_UV_fluorescence - start_from_previous_mc_model: Default:
Falsemolecular_clouds_models - stateq_min_iter: Default:
3Slab-models - sticking_coefficient: for all species Default:
1.0 - stop_after_contRT: Default:
False - stop_after_init: use this to just check the model setup Default:
Falsebeginnersguide / interface2D - surf_competition: Default:
False - surface_benchmark: cannot have H2OCO#; use a combination of switches instead Default:
False - surface_chemistry: Default:
FalseChemicalDatabases / Chemical_rates / grain_surface_chemistry - switch_off_H2form: Default:
False - switch_off_photo: Default:
False
T¶
- tau_cutoff: Default:
10.0RTbenchmark / Look_at_the_results / RTparameter - temp_precis: rel. precision in T-determination Default:
1e-06accelerate_ProDiMo - texplicit: Default:
0 - thermal_diffusion_only: only thermal diffusion Default:
False - threeReactants: 3-column format for Reactions.in? Default:
False - time_chem_disk: solve time-dependent disk chemistry? Default:
FalseDebugging_with_slot_keep / How_to_run_a_time_dependent_chemistry_model / chemistry_details - time_chem_disk_ifspecies: Default:
FalseHow_to_run_a_time_dependent_chemistry_model - time_dependent: Default:
FalseHow_to_run_a_time_dependent_chemistry_model - tol_convergence: convergence criterion for global interation Default:
0.05mixing - tol_diskstruc: rel.&abs. tolerance for vertical disk struc Default:
1e-08 - tunnelling: no surface reaction tunnelling Default:
Truegrain_surface_chemistry
U¶
- umist_code: Default:
False - unique_fbinding: Default:
Falsegrain_surface_chemistry - unit_testing: Default:
False - use_Alchemic_nsite: Default:
False - use_MCFOST_rgrid: Default:
FalseProDiMo_on_MCFOST - use_chemsol: Default:
Falseaccelerate_ProDiMo - use_drift_phoenix: Default:
FalseStellarSpectra / star
V¶
- v_turb: turbulent Doppler width; doppler width of UV H2-lines Default:
0.15Unit:kmProDiMo_Line_Transfer - verbose_level: how much output? (-1...4); minimal output Default:
0Debugging_with_slot_keep / How_do_I / chemistry_details / grain_surface_chemistry / molecular_clouds_models - vert_pot: Default:
0.0 - vturb_from_alpha: Default:
False - vturb_mc: Default:
1.0Unit:kmgrain_surface_chemistry / molecular_clouds_models
W¶
- warp_angle: Default:
0.0 - water_h2_ortho_para: Default:
False - water_ice_photodesorption_eff: Default:
False - wdrift: Default:
1.0Unit:AU - weight_FLITS: Default:
1.0/5.0 - weight_HEIGHTS: Default:
0.0 - weight_IMAGES: Default:
1.0/5.0 - weight_LINES: Default:
1.0/5.0fitting - weight_PHOTO: Default:
1.0/5.0 - weight_SPITZER: Default:
1.0/5.0fitting - weight_VISIB: Default:
1.0/5.0 - write_fits_binary: use fits format for Mie and restart output; use fits-format? Default:
Truefits_format - write_image_out: Default:
TrueProDiMo_SED - write_pop: write output for immediate line transfer? Default:
FalseHow_to_set_parameters / ProDiMo_Line_Transfer / RATRAN / Run_ProDiMo - write_posDep_opac: write position dependnet opacity output files Default:
False - write_zdist: Default:
False
Z¶
- zone1_hs (multi zone): multiple_zones
- zone2_hs (multi zone): multiple_zones
- zone3_hs (multi zone): multiple_zones
- zone4_hs (multi zone): multiple_zones